Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Htt

Cell type

Cell type Class
Neural
Cell type
Cortex
NA
NA

Attributes by original data submitter

Sample

source_name
cortex
cell type
brain
genotype
B6.HttQ111/+
chip antibody
anti-HTT EPR5526
agent
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
IPs were performed using Abcam Anti-huntingtin antibody EPR5526 (#ab109115). NEB NextUltra DNA Library Preparation kit following the manufacturer's recommendations (Illumina, San Diego, CA, USA).

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
68444895
Reads aligned (%)
9.4
Duplicates removed (%)
7.9
Number of peaks
352 (qval < 1E-05)

mm9

Number of total reads
68444895
Reads aligned (%)
9.4
Duplicates removed (%)
7.9
Number of peaks
333 (qval < 1E-05)

Base call quality data from DBCLS SRA